threeBrain - Your Advanced 3D Brain Visualization
A fast, interactive cross-platform, and easy to share 'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or 'AFNI/SUMA' surfaces. The viewer widget can be either standalone or embedded into 'R-shiny' applications. The standalone version only require a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox', 'Safari'), and can be inserted into any websites. The 'R-shiny' support allows the 3D viewer to be dynamically generated from reactive user inputs. Please check the publication by Wang, Magnotti, Zhang, and Beauchamp (2023, <doi:10.1523/ENEURO.0328-23.2023>) for electrode localization. This viewer has been fully adopted by 'RAVE' <https://openwetware.org/wiki/RAVE>, an interactive toolbox to analyze 'iEEG' data by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>). Please check 'citation("threeBrain")' for details.
Last updated 3 days ago
brainecogelectroencephalographyieeglocalizationmri-brainneuroimagingtemplate-brains
39 stars 3.45 score 65 dependencies 1 dependentsfilearray - File-Backed Array for Out-of-Memory Computation
Stores large arrays in files to avoid occupying large memories. Implemented with super fast gigabyte-level multi-threaded reading/writing via 'OpenMP'. Supports multiple non-character data types (double, float, complex, integer, logical, and raw).
Last updated 10 days ago
arraybig-datamemory-mapout-of-memoryoutofmemory
17 stars 2.19 score 5 dependencies 2 dependentsrpymat - Easy to Configure an Isolated 'Python' Environment
Aims to create a single isolated 'Miniconda' and 'Python' environment for reproducible pipeline scripts. The package provides utilities to run system command within the 'conda' environment, making it easy to install, launch, manage, and stop 'Jupyter-lab'.
Last updated 11 months ago
1 stars 1.65 score 31 dependencies 3 dependentsshidashi - A Shiny Dashboard Template System
A template system based on 'AdminLTE3' (<https://adminlte.io/themes/v3/>) theme. Comes with default theme that can be easily customized. Developers can upload modified templates on 'Github', and users can easily download templates with 'RStudio' project wizard. The key features of the default template include light and dark theme switcher, resizing graphs, synchronizing inputs across sessions, new notification system, fancy progress bars, and card-like flip panels with back sides, as well as various of 'HTML' tool widgets.
Last updated 5 months ago
7 stars 1.59 score 37 dependencies 1 dependentsravedash - Dashboard System for Reproducible Visualization of 'iEEG'
Dashboard system to display the analysis results produced by 'RAVE' (Magnotti J.F., Wang Z., Beauchamp M.S. (2020), R analysis and visualizations of 'iEEG' <doi:10.1016/j.neuroimage.2020.117341>). Provides infrastructure to integrate customized analysis pipelines into dashboard modules, including file structures, front-end widgets, and event handlers.
Last updated 12 days ago
1 stars 1.45 score 124 dependenciesreadNSx - Read 'Blackrock-Microsystems' Files ('NEV', 'NSx')
Loads 'Blackrock' <https://blackrockneurotech.com> neural signal data files into the memory, provides utility tools to extract the data into common formats such as plain-text 'tsv' and 'HDF5'.
Last updated 5 days ago
data-formatsdbiieegieeg-dataneuroscience-data
3 stars 1.40 score 8 dependenciesrpyANTs - An Alternative Advanced Normalization Tools ('ANTs')
Provides portable access from 'R' to biomedical image processing toolbox 'ANTs' by Avants et al. (2009) <doi:10.54294/uvnhin> via seamless integration with the 'Python' implementation 'ANTsPy'. Allows biomedical images to be processed in 'Python' and analyzed in 'R', and vice versa via shared memory. See 'citation("rpyANTs")' for more reference information.
Last updated 2 days ago
antsbrainieegmrineuroimagingnormalizationpythonregistration
1 stars 1.26 score 33 dependenciesravemanager - Manage 'RAVE' Packages
Manages installation, upgrade, and removal of packages and corresponding dependence for the project 'RAVE' (R Analysis and Visualization for 'iEEG').
Last updated 3 months ago
1.16 score 0 dependenciesspfda - Function-on-Scalar Regression with Group-Bridge Penalty
Implements a group-bridge penalized function-on-scalar regression model proposed by Wang et al. (2020) <arXiv:2006.10163>, to simultaneously estimate functional coefficient and recover the local sparsity.
Last updated 2 years ago
function-on-scalar-regressionregularization-methodssparse
0.63 score 1 dependenciesravebuiltins - Builtin Modules for `RAVE`
This package provides builtin modules for `RAVE`. It aims at analyze and visualize `iEEG` data from different perspectives.
Last updated 1 years ago
3 stars 0.61 score 215 dependenciesrnwb - 'Neurodata' Without Borders in R
Supports 'Neurodata' Without Borders ('NWB') format in R.
Last updated 11 months ago
0.09 score 33 dependenciesrutabaga - Simple R Tools for Analysis and Visualizations
Provides functions (R, C++) to speed up array calculations. Includes various tools for prettier visualizations via R base plots.
Last updated 2 years ago
0.09 score 42 dependencies