Package: ravedash 0.1.3.31
ravedash: Dashboard System for Reproducible Visualization of 'iEEG'
Dashboard system to display the analysis results produced by 'RAVE' (Magnotti J.F., Wang Z., Beauchamp M.S. (2020), R analysis and visualizations of 'iEEG' <doi:10.1016/j.neuroimage.2020.117341>). Provides infrastructure to integrate customized analysis pipelines into dashboard modules, including file structures, front-end widgets, and event handlers.
Authors:
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ravedash.pdf |ravedash.html✨
ravedash/json (API)
NEWS
| # Install ravedash in R: |
| install.packages('ravedash', repos = c('https://dipterix.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dipterix/ravedash/issues
Last updated 26 days agofrom:1d330c3ce4821e920e26e554179726c47fa9216e
Exports:%OF%be_patient_textcard_badgecard_hrefcard_recalculate_badgeclear_notificationsclose_alert2close_loadercurrent_shiny_themedebug_modulesdisable_recalculate_badgeenable_recalculate_badgeerror_alerterror_notificationfinished_textfire_rave_eventflex_group_boxget_active_module_infoget_active_pipelineget_default_handlersget_outputget_output_optionsget_rave_eventget_session_by_rave_idgroup_boxinput_cardlaunch_sessionlist_sessionloggerlogger_error_conditionlogger_thresholdmodule_server_commonnew_rave_shiny_component_containernew_sessionopen_loaderoutput_cardoutput_cardsetoutput_gadgetoutput_gadget_containerplotOutput2presets_analysis_electrode_selector2presets_analysis_rangespresets_baseline_choicespresets_condition_groupspresets_import_export_subject_pipelinepresets_import_setup_blockspresets_import_setup_channelspresets_import_setup_nativepresets_loader_3dviewerpresets_loader_3dviewer2presets_loader_electrodespresets_loader_epochpresets_loader_projectpresets_loader_referencepresets_loader_subjectpresets_loader_subject_onlypresets_loader_sync_project_subjectravedash_footerregister_outputregister_output_optionsregister_rave_sessionremove_all_sessionsremove_sessionrun_analysis_buttonsafe_observesession_getoptsession_logsession_setoptset_card_badgeset_card_url_schemeset_logger_pathshiny_alert2shiny_cacheshiny_check_inputshiny_iconsshow_notificationshutdown_sessionsimple_layoutstandalone_viewerstart_sessionswitch_moduletemp_dirtemp_fileuse_sessionwatch_data_loadedwatch_loader_openedwith_error_alertwith_error_notificationwith_log_modal
Dependencies:abindanytimeaskpassbackportsbase64encbase64urlBHbitbit64bitopsbslibcachemcallrcheckmateclicodetoolscommonmarkcpp11crayoncurldata.tabledigestdipsausdownloaderedfReaderevaluatefansifastmapfilearrayfontawesomeformatRfreesurferformatsfsfstfstcorefuturefuture.applygiftiglobalsgluehdf5rherehighrhtmltoolshtmlwidgetshttpuvhttrigraphIRdisplayIRkerneljquerylibjsonliteknitrlaterlatticelifecyclelistenvloggermagrittrMASSMatrixmemoisemimemultitaperopenssloreoro.niftiparallellypbdZMQpillarpkgconfigpkgfilecachepngpracmaprocessxprogressrpromisespsR.matlabR.methodsS3R.ooR.utilsR6rappdirsraveioravetoolsRcppRcppEigenRcppTOMLremotesreprreticulaterlangrmarkdownRNiftiRNiftyRegrprojrootrpymatrstudioapisasssecretbaseservrshidashishinyshinyvalidateshinyWidgetssignalsourcetoolsstringistringrsystargetsthreeBraintibbletidyselecttinytexutf8uuidvctrswaveslimwithrxfunxml2xtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a badge widget located at card header | card_badge card_recalculate_badge disable_recalculate_badge enable_recalculate_badge set_card_badge |
| Set 'URL' scheme for modules | card_href card_url set_card_url_scheme |
| Debug 'RAVE' modules interactively in local project folder | debug_modules |
| Get current active module information, internally used | get_active_module_info get_active_pipeline |
| Group input elements into a box with title | flex_group_box group_box |
| Logger system used by 'RAVE' | error_alert error_notification logger logger_error_condition logger_threshold set_logger_path with_error_alert with_error_notification |
| Default module server function | module_server_common |
| Creates a container for preset components | new_rave_shiny_component_container |
| 'RAVE' dashboard output gadgets | output_gadget output_gadget_container |
| Shiny plot output with minimum height and additional classes | plotOutput2 |
| Randomly choose a text from a list of strings | be_patient_text finished_text random-text |
| Input and output card (front-end element) | input_card output_card output_cardset rave-input-output-card |
| 'RAVE' run-time events | close_loader current_shiny_theme fire_rave_event get_default_handlers get_rave_event get_session_by_rave_id open_loader rave-runtime-events register_rave_session watch_data_loaded watch_loader_opened |
| Create, register, list, and remove 'RAVE' sessions | launch_session list_session new_session rave-session remove_all_sessions remove_session session_getopt session_log session_setopt shutdown_session start_session use_session |
| Preset reusable front-end components for 'RAVE' modules | presets_analysis_electrode_selector2 presets_analysis_ranges presets_baseline_choices presets_condition_groups presets_import_export_subject_pipeline presets_import_setup_blocks presets_import_setup_channels presets_import_setup_native presets_loader_3dviewer presets_loader_3dviewer2 presets_loader_electrodes presets_loader_epoch presets_loader_project presets_loader_reference presets_loader_subject presets_loader_subject_only presets_loader_sync_project_subject rave-ui-preset |
| A hovering footer at bottom-right | ravedash_footer |
| Register output and output options | get_output get_output_options register_output register_output_options |
| Button to trigger analysis | run_analysis_button |
| Safe-wrapper of 'shiny' 'observe' function | safe_observe |
| Obtain caching object for current run-time shiny session | shiny_cache |
| Check shiny inputs and modify if validation fails | shiny_check_input |
| Shiny icons | shiny_icons |
| Simple input-output layout | simple_layout |
| Register shiny-output options to allow display in stand-alone viewers | standalone_viewer |
| Drive 'RAVE' browser to switch to another module | switch_module |
| Create a random temporary file path for current session | temp_dir temp_file |
| Evaluate script in the background and show the results from shiny modal dialogue | with_log_modal |
