Package: rpyANTs 0.0.3.9003

rpyANTs: An Alternative Advanced Normalization Tools ('ANTs')

Provides portable access from 'R' to biomedical image processing toolbox 'ANTs' by Avants et al. (2009) <doi:10.54294/uvnhin> via seamless integration with the 'Python' implementation 'ANTsPy'. Allows biomedical images to be processed in 'Python' and analyzed in 'R', and vice versa via shared memory. See 'citation("rpyANTs")' for more reference information.

Authors:Zhengjia Wang [aut, cre]

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NEWS

# Install rpyANTs in R:
install.packages('rpyANTs', repos = c('https://dipterix.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dipterix/rpyants/issues

On CRAN:

antsbrainieegmrineuroimagingnormalizationpythonregistration

52 exports 1 stars 1.33 score 33 dependencies 179 downloads

Last updated 2 months agofrom:130279339e198109bb6b29a5b57e25fee00c3401

Exports:antsants_apply_transformsants_apply_transforms_to_pointsants_availableants_motion_correctionants_plotants_plot_gridants_registrationants_resample_imageantspynet_brain_extractionantspynet_deep_atroposantspynet_desikan_killiany_tourville_labelingantspynet_preprocess_brain_imageas_ANTsImageas_ANTsTransformcorrect_intensityensure_templatehalpern_apply_transform_template_mrihalpern_register_ct_mrihalpern_register_template_mriimportinstall_antsis_affine3Dload_antsload_antspynetnp_arraypypy_boolpy_builtinpy_callpy_del_attrpy_del_itempy_dictpy_evalpy_get_attrpy_get_itempy_helppy_lenpy_listpy_nonepy_run_stringpy_set_attrpy_set_itempy_slicepy_strpy_to_rpy_to_r_wrapperr_to_pyrepl_pythonrun_scriptt1_preprocesstuple

Dependencies:base64encclicrayondigestevaluatefansifastmapglueherehtmltoolsIRdisplayIRkerneljsonlitelatticelifecycleMatrixpbdZMQpillarpngrappdirsRcppRcppTOMLreprreticulaterlangRNiftirprojrootrpymatrstudioapiutf8uuidvctrswithr

Readme and manuals

Help Manual

Help pageTopics
Get 'ANTsPy' moduleants load_ants
Apply a transform list to map an image from one domain to anotherants_apply_transforms
Apply a transform list to map points from one domain to anotherants_apply_transforms_to_points
Check if 'ANTs' is availableants_available
Motion correctionants_motion_correction
Plot single ''ANTsImage''ants_plot
Plot multiple ''ANTsImage''ants_plot_grid
Register two images using 'ANTs'ants_registration
Resample imageants_resample_image
Get ''ANTsPyNet'' moduleantspynet load_antspynet
Extract brain and strip skullantspynet_brain_extraction
Process brain image prior to segmentationantspynet_preprocess_brain_image
Imaging segmentation using 'antspynet'antspynet_deep_atropos antspynet_desikan_killiany_tourville_labeling antspynet_segmentation
Load data as ''ANTsImage'' classas_ANTsImage
Convert to ''ANTsTransform''as_ANTsTransform as_ANTsTransform.ants.core.ants_image.ANTsImage as_ANTsTransform.ants.core.ants_transform.ANTsTransform as_ANTsTransform.character as_ANTsTransform.default as_ANTsTransform.numpy.ndarray
Truncate and correct 'MRI' intensitycorrect_intensity
Ensure the template directory is downloadedensure_template
'ANTs' functions for 'Halpern' labhalpern_apply_transform_template_mri halpern_preprocess halpern_register_ct_mri halpern_register_template_mri
Install 'ANTs' via 'ANTsPy'install_ants
Check if an object is a 3D 'affine' transform matrixis_affine3D is_affine3D.ants.core.ants_transform.ANTsTransform is_affine3D.default
Get 'Python' main process environmentpy
Get 'Python' built-in objectpy_builtin
List in 'Python'py_list
Slice index in 'Python' arrayspy_slice
Process 'T1' imaget1_preprocess