NEWS

rpyANTs 0.0.4 (2024-12-17)

Added get_xform and set_xform to get and set qform in ANTsImage
Removed dependence nibabel, which might conflict with ANTsPy on certain platforms
Using the full path to ANTsImage class instead of the shortcut one from Python to avoid issues where ANTsImage is not exported (ANTsPyx==0.5.3)
Using multiple imaging files and faster normalization parameters when normalizing the native images to template
Fixed get_lib_fn not available under ANTsPyx>=0.5.3
Changed default Python version
Fixed bugs when mapping native ROI to template
Supported YAEL processing pipeline and use ANTsImage as inputs
Added mapping images from native to template
Fixed a typo in folder naming
Method get_native_mapping gets correct absolute paths
Allowed YAEL class to add default images through constructor
Added intensity correction
Exported ensure_template and added extra information
Set time-out to ensure downloading the correct templates
Added YAEL class to support pipelines mentioned in the paper for image registration and normalization

Added registration code that reproduces Halpern lab results
Added t1_preprocess to align MRI to template using non-linear registration
No more injection to Python on Windows as the memory pointer crash has been fixed by upstream developers
No active binding to antspynet as this Python package might fail to load on some systems

Added antspynet to the installation
Added ants_apply_transforms and ants_apply_transforms_to_points to apply registration transforms
Added ants_resample_image to resample images
Added antspynet_brain_extraction to extract brain and strip skulls
Added antspynet_deep_atropos and antspynet_desikan_killiany_tourville_labeling to segment brain images