Changes in version 0.0.6 (2026-01-11) - Improved normalization for irregular brain - Fixed issues where atlases in nii are ignored - Added extract_coregistartion to extract index to world and world to world matrix - Added supports to the symmetric MNI152 templates - Normalization allows with_skull or without skulls; cost_function can be customized too - Users have choices to disable antspynet for consistency - Suppressed a test on MacOS due to ImageIO issue Changes in version 0.0.5 (2025-07-22) - Added backward compatibility support for Py39 - Fixed the missing pow function from numpy - Added atropos segments for templates - New normalization: added atropos segments for normalization to templates - ANTsPyNet model locations are stored in package data directory to comply with CRAN policy - Always run abp during normalization - Added brain extraction function using base ANTs - Fixed issue when subject code contains underscore, causing non-comply BIDS format, causing parsing errors - Added fsaverage template for normalization Changes in version 0.0.4 (2024-12-17) - Added get_xform and set_xform to get and set qform in ANTsImage - Removed dependence nibabel, which might conflict with ANTsPy on certain platforms - Using the full path to ANTsImage class instead of the shortcut one from Python to avoid issues where ANTsImage is not exported (ANTsPyx==0.5.3) - Using multiple imaging files and faster normalization parameters when normalizing the native images to template - Fixed get_lib_fn not available under ANTsPyx>=0.5.3 - Changed default Python version - Fixed bugs when mapping native ROI to template - Supported YAEL processing pipeline and use ANTsImage as inputs - Added mapping images from native to template - Fixed a typo in folder naming - Method get_native_mapping gets correct absolute paths - Allowed YAEL class to add default images through constructor - Added intensity correction - Exported ensure_template and added extra information - Set time-out to ensure downloading the correct templates - Added YAEL class to support pipelines mentioned in the paper for image registration and normalization Changes in version 0.0.3 (2023-12-21) - Added registration code that reproduces Halpern lab results - Added t1_preprocess to align MRI to template using non-linear registration - No more injection to Python on Windows as the memory pointer crash has been fixed by upstream developers - No active binding to antspynet as this Python package might fail to load on some systems Changes in version 0.0.2 (2023-07-16) - Added antspynet to the installation - Added ants_apply_transforms and ants_apply_transforms_to_points to apply registration transforms - Added ants_resample_image to resample images - Added antspynet_brain_extraction to extract brain and strip skulls - Added antspynet_deep_atropos and antspynet_desikan_killiany_tourville_labeling to segment brain images Changes in version 0.0.1 (2023-02-28) - Added a NEWS.md file to track changes to the package.