NEWS
hdf5r 1.3.14
- Fixed installation against 'HDF5' 2.x. The private driver-init symbols
H5FD_family_init(), H5FD_log_init(), H5FD_sec2_init() and
H5FD_stdio_init() were removed from the public 'HDF5' headers, which broke
compilation on every platform building against 'HDF5' 2.x. The R wrappers
around them were never reachable from R and have been removed.
- Fixed
H5T_ENUM for enumerations containing negative values on platforms
where plain char is unsigned, such as AArch64 Linux. Such enumerations
previously failed with a value redefinition error from 'HDF5'.
ls(), and therefore list.datasets(), list.groups() and
list.objects(), now default to order = h5const$H5_ITER_INC instead of
h5const$H5_ITER_NATIVE. H5_ITER_NATIVE leaves the order unspecified; it
came out in name order up to 'HDF5' 1.x but is creation order in 'HDF5' 2.x.
The new default keeps the listing in name order on every 'HDF5' version and
makes it agree with names(). Pass order = h5const$H5_ITER_NATIVE
explicitly to get the previous behaviour.- Fixed the final link step on platforms whose 'HDF5' serial build is named
libhdf5_serial (such as Debian and Ubuntu building against 'HDF5' 2.x).
configure now keeps the -lhdf5* libraries reported by h5cc -show and
only falls back to the generic -lhdf5_hl -lhdf5, which do not exist there,
when h5cc reports no 'HDF5' library itself.
- Fixed unprotected variables in
H5ToR_Post_RComplex() and guess_nelem()
reported by rchk.
- The
R6 class methods are now documented with ordinary roxygen2 comments
instead of the experimental in-body string literals that roxygen2 8 no
longer supports, so the manual pages can be regenerated again.
- Removed
formatR from Suggests; it is no longer used.
- The package is now checked and its website built by
GitHub Actions,
including jobs for AArch64 Linux and for 'HDF5' 2.x, the two platforms
behind the failures fixed in this release.
hdf5r 1.3.12 (2025-01-20)
- Fix compilation warning #232.
hdf5r 1.3.11 (2024-07-07)
- Fixes a bug, where an HDF5 array of length 0 is returned as NULL instead of an appropriate vector of length 0
- Fixes #223, where an incompatible pointer type occurs during compilation.
hdf5r 1.3.10 (2024-03-02)
- Fixed warnings related to printf in convert.c on M1Mac
- Fixed broken links to HDF5 docs
- Conform to RTools (PR #218)
hdf5r 1.3.9 (2024-01-14)
- Fixed issues with string formatting
hdf5r 1.3.8 (2023-01-21)
- Fixed issue in configue.ac that lead to failing builds.
hdf5r 1.3.7 (2022-10-03)
- Patched source code for hdf5r 1.10.6 and up
hdf5r 1.3.6 (2022-09-18)
- Adapted as.charater.factor_ext to be compatible with future changes in R. See issue #190
hdf5r 1.3.5 (2021-11-15)
- Change AC_HAVE_LIBRARY in inst/m4/ax_lib_hdf5.m4 to squash autoreconf complaint
hdf5r 1.3.4 (2021-08-25)
hdf5r 1.3.3 (2020-08-18)
- Bugfix for failing test related to 64-bit support
hdf5r 1.3.2 (2020-03-25)
- Add support for HDF5 1.12.0 release
hdf5r 1.3.1 (2020-01-10)
- Add missing formatR dependency to Suggests entry
- Fix bug of multiple inclusion of defined variable in C code that causes error with new gcc version
hdf5r 1.3.0 (2019-10-06)
- Fixes bug #130. Errors from UBSAN-clang UBSAN-gcc
- Upgrades the windows version of HDF5 to 1.8.16 and ensures compatibility with RTools 4.0
hdf5r 1.2.0 (2019-04-20)
- Fixes bug #123: inconsistent subsetting, where certain subsets (usually short and one-dimensional) were
returned incorrectly (offset by 1)
hdf5r 1.1.1 (2019-03-26)
- Fixes some potential problematic places in code by RCHK
- Update the links to the documentation
hdf5r 1.0.1 (2018-10-07)
- Updated package to work with version 1.10.2 and 1.10.3 of HDF5
- Fixed issue #84, adding full.names argument in h5-wrapper to list.groups; also added test
- Fixed issue #82, causing the "ls" method to hang for some large datasets;
this is caused by H5Oget_info being slow
for such datasets; using the deprecated H5Aget_num_attrs instead where needed
hdf5r 1.0.0 (2017-10-25)
- First release of the hdf5r package