{ "_id": "6ad6aef94b18b90089998831", "Package": "threeBrain", "Type": "Package", "Title": "Your Advanced 3D Brain Visualization", "Version": "1.3.0.75", "Authors@R": "c(\nperson(\"Zhengjia\", \"Wang\", email = \"dipterix.wang@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")),\nperson(\"Xiang\", \"Zhang\", email = \"xiang.zhang@pennmedicine.upenn.edu\", role = c(\"ctb\", \"res\")),\nperson(\"Brian\", \"Metzger\", email = \"bmetzge1@swarthmore.edu\", role = c(\"res\")),\nperson(\"Elizabeth\", \"Nesbitt\", email = \"Elizabeth.Nesbitt@bcm.edu\", role = c(\"res\")),\nperson(\"Meng\", \"Li\", email = \"meng@rice.edu\", role = c(\"ths\")),\nperson(\"John\", \"Magnotti\", email = \"John.Magnotti@Pennmedicine.upenn.edu\", role = c(\"ctb\", \"res\")),\nperson(\"Michael\", \"Beauchamp\", email = \"Michael.Beauchamp@Pennmedicine.upenn.edu\", role = c(\"ths\", \"ctb\", \"dtc\"))\n)", "Description": "A fast, interactive cross-platform, and easy to share\n'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer'\nand/or 'AFNI/SUMA' surfaces. The viewer widget can be either\nstandalone or embedded into 'R-shiny' applications. The\nstandalone version only require a web browser with 'WebGL2'\nsupport (for example, 'Chrome', 'Firefox', 'Safari'), and can\nbe inserted into any websites. The 'R-shiny' support allows the\n3D viewer to be dynamically generated from reactive user\ninputs. Please check the publication by Wang, Magnotti, Zhang,\nand Beauchamp (2023, ) for\nelectrode localization. This viewer has been fully adopted by\n'RAVE' , an interactive toolbox to analyze\n'iEEG' data by Magnotti, Wang, and Beauchamp (2020,\n). Please check\ncitation(\"threeBrain\") for details.", "License": "MPL-2.0", "Encoding": "UTF-8", "Language": "en-US", "URL": "https://dipterix.org/threeBrain/,\nhttps://github.com/dipterix/threeBrain", "BugReports": "https://github.com/dipterix/threeBrain/issues", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://dipterix.r-universe.dev", "Date/Publication": "2026-10-19 22:07:04 UTC", "RemoteUrl": "https://github.com/dipterix/threeBrain", "RemoteRef": "HEAD", "RemoteSha": "d93d06461275e21f2cdc0880487580b81db9895f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-19 23:56:08 UTC", "User": "root" }, "Author": "Zhengjia Wang [aut, cre, cph],\nXiang Zhang [ctb, res],\nBrian Metzger [res],\nElizabeth Nesbitt [res],\nMeng Li [ths],\nJohn Magnotti [ctb, res],\nMichael Beauchamp [ths, ctb, dtc]", "Maintainer": "Zhengjia Wang ", "_user": "dipterix", "_type": "src", "_file": "threeBrain_1.3.0.75.tar.gz", "_fileid": "https://r2.ropensci.org/51535f7cfa535d78ceaf0ec999d54787d34d16588f5c41e79b02c51ef871111c", "_filesize": 2815674, "_sha256": "51535f7cfa535d78ceaf0ec999d54787d34d16588f5c41e79b02c51ef871111c", "_expires": "2027-01-27T23:59:47.000Z", "_created": "2026-10-19T23:56:08.000Z", "_published": "2026-10-19T23:59:52.970Z", "_upstream": "https://github.com/dipterix/threeBrain", "_status": "success", "_maintainer": { "name": "Zhengjia Wang", "email": "dipterix.wang@gmail.com", "login": "dipterix", "description": "Know the known to know the unknown", "uuid": 8163576 }, "_jobs": [ { "job": 118374231526, "time": 169, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12231160128" }, { "job": 118374231533, "time": 169, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12231255052" }, { "job": 118374231514, "time": 93, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": 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streamline file (`trk`, `tck`, `tt`) no longer also shows up under `Configure ROI Surfaces`\n", "time": 1792447624 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "utils", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "dipsaus", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "servr", "role": "Imports" }, { "package": "png", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "shiny", "version": ">= 1.2.0", "role": "Imports" }, { "package": "digest", "version": ">= 0.6.22", "role": "Imports" }, { "package": "freesurferformats", "version": ">= 0.1.7", "role": "Imports" }, { "package": "jsonlite", "version": ">= 1.5", "role": "Imports" }, { "package": "stringr", "version": ">= 1.3.1", "role": "Imports" }, { "package": "htmlwidgets", "version": ">= 1.3", "role": "Imports" }, { "package": "R6", 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"page": "BlankGeom", "title": "A geometry that renders nothing", "topics": [ "BlankGeom" ] }, { "page": "brain_proxy", "title": "Shiny Proxy for Viewer", "topics": [ "brain_proxy" ] }, { "page": "brain_setup", "title": "Setup Package, Install Environment", "topics": [ "brain_setup" ] }, { "page": "calculate_rotation", "title": "Calculate rotation matrix from non-zero vectors", "topics": [ "calculate_rotation" ] }, { "page": "check_freesurfer_path", "title": "Function to check whether `FreeSurfer` folder has everything we need", "topics": [ "check_freesurfer_path" ] }, { "page": "conform_volume", "title": "Conform imaging data in ''FreeSurfer'' way", "topics": [ "conform_volume" ] }, { "page": "create_group", "title": "Create a geometry group containing multiple geometries", "topics": [ "create_group" ] }, { "page": "cross_prod", "title": "Calculate cross-product of two vectors in '3D'", "topics": [ "cross_prod" ] }, { "page": "DataCubeGeom", "title": "R6 Class - Generate Data Cube Geometry", "topics": [ "DataCubeGeom" ] }, { "page": "DataCubeGeom2", "title": "R6 Class - Generate Data Cube Geometry via 3D Volume Texture", "topics": [ "DataCubeGeom2" ] }, { "page": "default_template_directory", "title": "Default Directory to Store Template Brain", "topics": [ "default_template_directory" ] }, { "page": "FreeGeom", "title": "R6 Class - Generate Geometry from Vertices and Face Indices", "topics": [ "FreeGeom" ] }, { "page": "freesurfer_lut", "title": "Query the 'FreeSurfer' labels", "topics": [ "freesurfer_lut" ] }, { "page": "generate_cortical_parcellation", "title": "Generate cortical annotations from template using surface mapping", "topics": [ "generate_cortical_parcellation" ] }, { "page": "generate_smooth_envelope", "title": "Generate smooth envelope around surface", "topics": [ "generate_smooth_envelope" ] }, { "page": "generate_subcortical_surface", "title": "Approximate 'sub-cortical' surfaces from 'parcellation'", "topics": [ "generate_subcortical_surface" ] }, { "page": "geom_freemesh", "title": "Creates any mesh geometry given vertices and face indices", "topics": [ "geom_freemesh" ] }, { "page": "geom_sphere", "title": "Create sphere geometry", "topics": [ "geom_sphere" ] }, { "page": "GeomGroup", "title": "R6 Class - Generate Group of Geometries", "topics": [ "GeomGroup" ] }, { "page": "get_digest_header", "title": "Function to read digest header", "topics": [ "get_digest_header" ] }, { "page": "get_ijk2ras", "title": "Get 'voxel' to world matrix", "topics": [ "get_ijk2ras" ] }, { "page": "import_from_freesurfer", "title": "Import from `FreeSurfer` and create `JSON` cache for 3D viewer", "topics": [ "import_from_freesurfer" ] }, { "page": "import-fs-suma", "title": "Import 'FreeSurfer' or 'SUMA' files into the viewer structure", "topics": [ "import-fs-suma", "import_fs", "import_suma" ] }, { "page": "LineSegmentsGeom", "title": "R6 Class - Generate Line Segments", "topics": [ "LineSegmentsGeom" ] }, { "page": 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