{
  "_id": "6a1a0c461d7bb097a09ccca6",
  "Package": "ravepipeline",
  "Type": "Package",
  "Title": "Reproducible Pipeline Infrastructure for Neuroscience",
  "Version": "0.1.0",
  "Language": "en-US",
  "Authors@R": "c(\nperson(\"Zhengjia\", \"Wang\", email = \"dipterix.wang@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")),\nperson(\"John\", \"Magnotti\", email = \"John.Magnotti@Pennmedicine.upenn.edu\", role = c(\"ctb\", \"res\")),\nperson(\"Xiang\", \"Zhang\", email = \"xiang.zhang@pennmedicine.upenn.edu\", role = c(\"ctb\", \"res\")),\nperson(\"Michael\", \"Beauchamp\", email = \"Michael.Beauchamp@Pennmedicine.upenn.edu\", role = c(\"ctb\", \"res\")),\nperson(\"Trustees of University of Pennsylvania\", comment = \"Copyright Holder\", role = c(\"cph\"))\n)",
  "Description": "Defines the underlying pipeline structure for reproducible\nneuroscience, adopted by 'RAVE' (reproducible analysis and\nvisualization of intracranial electroencephalography); provides\nhigh-level class definition to build, compile, set, execute,\nand share analysis pipelines. Both R and 'Python' are\nsupported, with 'Markdown' and 'shiny' dashboard templates for\nextending and building customized pipelines. See the full\ndocumentations at <https://rave.wiki>; to cite us, check out\nour paper by Magnotti, Wang, and Beauchamp (2020,\n<doi:10.1016/j.neuroimage.2020.117341>), or run\ncitation(\"ravepipeline\") for details.",
  "Copyright": "Trustees of University of Pennsylvania owns the copyright of\nthe package unless otherwise stated. Zhengjia Wang owns the\ncopyright of all the low-level functions included in\n'R/common.R', 'R/fastmap2', 'R/fastqueue2.R', 'R/filesys.R',\n'R/fst.R', 'R/json.R', 'R/os_info.R', 'R/parallel.R',\n'R/progress.R', 'R/simplelocker.R', 'R/yaml.R', and all the\ntemplate files under 'inst/rave-pipelines' and\n'inst/rave-modules', these files are licensed under 'MIT'.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "URL": "https://dipterix.org/ravepipeline/, https://rave.wiki,\nhttps://github.com/dipterix/ravepipeline",
  "BugReports": "https://github.com/dipterix/ravepipeline/issues",
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  "Repository": "https://dipterix.r-universe.dev",
  "Date/Publication": "2026-05-29 21:20:18 UTC",
  "RemoteUrl": "https://github.com/dipterix/ravepipeline",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 21:55:31 UTC",
    "User": "root"
  },
  "Author": "Zhengjia Wang [aut, cre, cph],\nJohn Magnotti [ctb, res],\nXiang Zhang [ctb, res],\nMichael Beauchamp [ctb, res],\nTrustees of University of Pennsylvania [cph] (Copyright Holder)",
  "Maintainer": "Zhengjia Wang <dipterix.wang@gmail.com>",
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    "%...>%",
    "%...T!%",
    "%...T>%",
    "add_module_registry",
    "as.promise",
    "base64_decode",
    "base64_encode",
    "base64_plot",
    "base64_urldecode",
    "base64_urlencode",
    "check_job",
    "configure_knitr",
    "digest",
    "dir_create2",
    "get_module_description",
    "get_modules_registries",
    "glue",
    "html_embed_read",
    "html_embed_write",
    "install_modules",
    "install_snippet",
    "lapply_jobs",
    "list_snippets",
    "load_snippet",
    "load_targets",
    "load_yaml",
    "logger",
    "logger_error_condition",
    "logger_threshold",
    "module_add",
    "module_registry",
    "module_registry2",
    "pipeline",
    "pipeline_attach",
    "pipeline_build",
    "pipeline_clean",
    "pipeline_collection",
    "pipeline_create_subject_pipeline",
    "pipeline_create_template",
    "pipeline_debug",
    "pipeline_dep_targets",
    "pipeline_description",
    "pipeline_eval",
    "pipeline_export_wizard",
    "pipeline_find",
    "pipeline_fork",
    "PIPELINE_FORK_PATTERN",
    "pipeline_from_path",
    "pipeline_get_preferences",
    "pipeline_has_preferences",
    "pipeline_hasname",
    "pipeline_import_wizard",
    "pipeline_install_github",
    "pipeline_install_local",
    "pipeline_list",
    "pipeline_load_extdata",
    "pipeline_plot_data",
    "pipeline_progress",
    "pipeline_read",
    "pipeline_render",
    "pipeline_root",
    "pipeline_run",
    "pipeline_run_bare",
    "pipeline_save_extdata",
    "pipeline_set_preferences",
    "pipeline_settings_get",
    "pipeline_settings_set",
    "pipeline_setup_rmd",
    "pipeline_shared",
    "pipeline_target_names",
    "pipeline_translate_settings",
    "pipeline_vartable",
    "pipeline_visualize",
    "pipeline_watch",
    "PipelineCollections",
    "PipelineResult",
    "PipelineTools",
    "rave_progress",
    "rave_serialize_impl",
    "rave_serialize_refhook",
    "rave_unserialize_impl",
    "rave_unserialize_refhook",
    "RAVEFileArray",
    "raveio_confpath",
    "raveio_getopt",
    "raveio_resetopt",
    "raveio_setopt",
    "ravepipeline_finalize_installation",
    "RAVESerializable",
    "remove_job",
    "resolve_job",
    "save_yaml",
    "set_logger_path",
    "start_job",
    "update_local_snippet",
    "with_rave_parallel"
  ],
  "_help": [
    {
      "page": "base64-utils",
      "title": "Convert from and to 'base64' string",
      "topics": [
        "base64-utils",
        "base64_decode",
        "base64_encode",
        "base64_plot",
        "base64_urldecode",
        "base64_urlencode"
      ]
    },
    {
      "page": "dir_create2",
      "title": "Force creating directory with checks",
      "topics": [
        "dir_create2"
      ]
    },
    {
      "page": "html-embed",
      "title": "Embed binary data or JSON strings into HTML files",
      "topics": [
        "html-embed",
        "html_embed_read",
        "html_embed_write"
      ]
    },
    {
      "page": "install_modules",
      "title": "Install 'RAVE' modules",
      "topics": [
        "install_modules"
      ]
    },
    {
      "page": "logger",
      "title": "Logger system used by 'RAVE'",
      "topics": [
        "logger",
        "logger_error_condition",
        "logger_threshold",
        "set_logger_path"
      ]
    },
    {
      "page": "module_add",
      "title": "Add new 'RAVE' (2.0) module to current project",
      "topics": [
        "module_add"
      ]
    },
    {
      "page": "module_registry",
      "title": "'RAVE' module registry",
      "topics": [
        "add_module_registry",
        "get_modules_registries",
        "get_module_description",
        "module_registry",
        "module_registry2"
      ]
    },
    {
      "page": "pipeline",
      "title": "Creates 'RAVE' pipeline instance",
      "topics": [
        "pipeline",
        "pipeline_from_path"
      ]
    },
    {
      "page": "pipeline_collection",
      "title": "Combine and execute pipelines",
      "topics": [
        "pipeline_collection"
      ]
    },
    {
      "page": "pipeline_install",
      "title": "Install 'RAVE' pipelines",
      "topics": [
        "pipeline_install",
        "pipeline_install_github",
        "pipeline_install_local"
      ]
    },
    {
      "page": "pipeline_plot_data",
      "title": "Create plot data from within pipeline make-file",
      "topics": [
        "pipeline_plot_data"
      ]
    },
    {
      "page": "pipeline_settings_get_set",
      "title": "Get or change pipeline input parameter settings",
      "topics": [
        "pipeline_settings_get",
        "pipeline_settings_get_set",
        "pipeline_settings_set"
      ]
    },
    {
      "page": "pipeline_translate_settings",
      "title": "Translate pipeline settings between pipelines",
      "topics": [
        "pipeline_export_wizard",
        "pipeline_import_wizard",
        "pipeline_translate_settings"
      ]
    },
    {
      "page": "pipeline-knitr-markdown",
      "title": "Configure ''rmarkdown'' files to build 'RAVE' pipelines",
      "topics": [
        "configure_knitr",
        "pipeline-knitr-markdown",
        "pipeline_render",
        "pipeline_setup_rmd"
      ]
    },
    {
      "page": "PipelineCollections",
      "title": "Connect and schedule pipelines",
      "topics": [
        "PipelineCollections"
      ]
    },
    {
      "page": "PipelineResult",
      "title": "Class definition for 'RAVE' pipeline results",
      "topics": [
        "PipelineResult"
      ]
    },
    {
      "page": "PipelineTools",
      "title": "Class definition for 'RAVE' pipelines",
      "topics": [
        "PipelineTools"
      ]
    },
    {
      "page": "rave_progress",
      "title": "'RAVE' progress",
      "topics": [
        "rave_progress"
      ]
    },
    {
      "page": "rave-pipeline",
      "title": "Low-level 'RAVE' pipeline functions",
      "topics": [
        "load_targets",
        "pipeline_attach",
        "pipeline_build",
        "pipeline_clean",
        "pipeline_create_subject_pipeline",
        "pipeline_create_template",
        "pipeline_debug",
        "pipeline_dep_targets",
        "pipeline_description",
        "pipeline_eval",
        "pipeline_find",
        "pipeline_fork",
        "pipeline_hasname",
        "pipeline_list",
        "pipeline_load_extdata",
        "pipeline_progress",
        "pipeline_read",
        "pipeline_root",
        "pipeline_run",
        "pipeline_run_bare",
        "pipeline_save_extdata",
        "pipeline_shared",
        "pipeline_target_names",
        "pipeline_vartable",
        "pipeline_visualize",
        "pipeline_watch",
        "rave-pipeline"
      ]
    },
    {
      "page": "rave-pipeline-jobs",
      "title": "Run a function (job) in another session",
      "topics": [
        "check_job",
        "rave-pipeline-jobs",
        "remove_job",
        "resolve_job",
        "start_job"
      ]
    },
    {
      "page": "rave-pipeline-preferences",
      "title": "Pipeline preference management (low-level)",
      "topics": [
        "pipeline_get_preferences",
        "pipeline_has_preferences",
        "pipeline_set_preferences",
        "rave-pipeline-preferences"
      ]
    },
    {
      "page": "rave-serialize-refhook",
      "title": "Serialization reference hook generic functions",
      "topics": [
        "rave-serialize-refhook",
        "rave_serialize_impl",
        "rave_serialize_impl.default",
        "rave_serialize_impl.rave-brain",
        "rave_serialize_impl.RAVESerializable",
        "rave_serialize_refhook",
        "rave_unserialize_impl",
        "rave_unserialize_impl.default",
        "rave_unserialize_impl.rave_serialized",
        "rave_unserialize_impl.rave_serialized_r6",
        "rave_unserialize_impl.rave_serialized_rave-brain",
        "rave_unserialize_refhook"
      ]
    },
    {
      "page": "rave-snippet",
      "title": "'RAVE' code snippets",
      "topics": [
        "install_snippet",
        "list_snippets",
        "load_snippet",
        "rave-snippet",
        "update_local_snippet"
      ]
    },
    {
      "page": "RAVEFileArray",
      "title": "'R6' wrapper for ''FileArray''",
      "topics": [
        "RAVEFileArray"
      ]
    },
    {
      "page": "raveio-option",
      "title": "Set/Get 'RAVE' option",
      "topics": [
        "raveio-option",
        "raveio_confpath",
        "raveio_getopt",
        "raveio_resetopt",
        "raveio_setopt"
      ]
    },
    {
      "page": "ravepipeline_finalize_installation",
      "title": "Download 'RAVE' built-in pipelines and code snippets",
      "topics": [
        "ravepipeline_finalize_installation"
      ]
    },
    {
      "page": "ravepipeline-constants",
      "title": "Constant variables used in 'RAVE' pipeline",
      "topics": [
        "PIPELINE_FORK_PATTERN",
        "ravepipeline-constants"
      ]
    },
    {
      "page": "RAVESerializable",
      "title": "Abstract class for 'RAVE' serialization",
      "topics": [
        "RAVESerializable"
      ]
    },
    {
      "page": "read-write-yaml",
      "title": "Read write ''YAML'' format",
      "topics": [
        "load_yaml",
        "read-write-yaml",
        "save_yaml"
      ]
    },
    {
      "page": "with_rave_parallel",
      "title": "Internal parallel functions",
      "topics": [
        "lapply_jobs",
        "with_rave_parallel"
      ]
    }
  ],
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    "base64url",
    "callr",
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