{ "_id": "6a1f2915b401979e73423d7c", "Package": "rave", "Type": "Package", "Title": "R Analysis and Visualization of 'ECOG/iEEG' Data", "Version": "1.0.8", "Authors@R": "c(\nperson(\"Zhengjia\", \"Wang\", email = \"dipterix.wang@gmail.com\", role = c(\"cph\", \"aut\", \"cre\")),\nperson(\"John\", \"Magnotti\", role = c(\"aut\")),\nperson(\"Michael S.\", \"Beauchamp\", role = c(\"aut\", \"fnd\")),\nperson(\"Beauchamp lab\", email = \"beauchamplab@gmail.com\", role = c(\"cph\", \"fnd\"))\n)", "Description": "R Analysis and Visualization of 'ECOG/iEEG' Data RAVE\nprovides cross-platform analysis and visualizations for\nneuroscience 'ECoG/iEEG' data by \"just clicking buttons\". This\npackage include: (a) pre-processing of 'ECoG/iEEG' raw data\ninto 'HDF5' format (a cross-platform data format that can be\nused for R, Matlab, Python, Java and C/C++); (b) 'ECoG/iEEG'\nepoch and visualizations in real time; (c) Users can write\ncustomized analysis as R packages and easily insert into RAVE\nfor interactive visualizations. (d) 3D viewers driven by\n'WebGL'.", "License": "GPL-3", "Encoding": "UTF-8", "Language": "en-US", "URL": "https://rave.wiki, https://beauchamplab.github.io/rave/", "BugReports": "https://github.com/beauchamplab/rave/issues", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake libfftw3-dev libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev git libglpk-dev make\nlibharfbuzz-dev libhdf5-dev libgit2-dev libicu-dev libjpeg-dev\nlibpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev\nlibssl-dev python3 libx11-dev libzmq3-dev zlib1g-dev", "Repository": "https://dipterix.r-universe.dev", "Date/Publication": "2026-04-30 02:37:15 UTC", "RemoteUrl": "https://github.com/beauchamplab/rave", "RemoteRef": "HEAD", "RemoteSha": "1abe2ba011b17d25572a0e7862922a47896cf664", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 18:55:18 UTC", "User": "root" }, "Author": "Zhengjia Wang [cph, aut, cre],\nJohn Magnotti [aut],\nMichael S. Beauchamp [aut, fnd],\nBeauchamp lab [cph, fnd]", "Maintainer": "Zhengjia Wang ", "MD5sum": "7652b90960b12209b19190aaf8facca7", "_user": "dipterix", "_type": "src", "_file": "rave_1.0.8.tar.gz", "_fileid": "63a752818216dd5ab185da542e371943916de6878b4a29aa98f6ff96c821034a", "_filesize": 748055, "_sha256": "63a752818216dd5ab185da542e371943916de6878b4a29aa98f6ff96c821034a", "_created": "2026-06-02T18:55:18.000Z", "_published": "2026-06-02T19:03:49.149Z", "_distro": "noble", "_jobs": [ { "job": 79148896153, "time": 233, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7367143860" }, { "job": 79148896256, "time": 229, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7367142213" }, { "job": 79148896223, "time": 129, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7367216411" }, { "job": 79148896446, "time": 106, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7367223453" }, { 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"description": "Know the known to know the unknown" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rave" }, "_devurl": "https://github.com/beauchamplab/rave", "_pkgdown": "https://beauchamplab.github.io/rave/", "_searchresults": 11, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/rave.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "any_subject_loaded", "archive_subject", "arrange_data_dir", "arrange_modules", "as_subject", "attachDefaultDataRepository", "baseline", "cache", "cache_input", "check_dependencies", "check_subject", "clear_cache", "close_tab", "create_local_cache", "customizedUI", "decimate_fir", "define_initialization", "define_input", "define_output", "detect_modules", "diagnose_signal", "download_sample_data", "download_subject_data", "ECoGRepository", "Electrode", "electrode_localization", "eval_when_ready", "ExecEnvir", "export_diagnose_voltage", "fake_session", "finalize_installation", "get_dir", "get_module", "get_path", "get_rave_theme", "get_subjects", "get_val", "getDefaultDataRepository", "getDefaultReactiveInput", "getDefaultReactiveOutput", "getExecEnvirFromContext", "getModuleEnvirFromContext", "import_electrodes", "init_app", "init_module", "lapply_async", "lapply_async3", "launch_demo", "load_meta", "load_modules", "load_rave_module_package", "load_scripts", "module_analysis_names", "ModuleEnvir", "mount_demo_subject", "notch_channel", "notch_filter", "open_tab", "plot_signals", "progress", "pwelch", "r_to_py.Subject", "rave_brain2", "rave_checks", "rave_context", "rave_context_generics", "rave_failure", "rave_ignore", "rave_import_rawdata", "rave_module_tools", "rave_options", "rave_prepare", "rave_preprocess", "rave_preprocess_tools", "rave_version", "reload_module_package", "save_meta", "save_options", "set_rave_theme", "start_rave", "start_rave_legacy", "start_rave2", "start_yael", "Subject", "subject_tmpfile", "to_module", "view_layout", "wavelet" ], "_help": [ { "page": "any_subject_loaded", "title": "Function to check if data repository has data", "topics": [ "any_subject_loaded" ] }, { "page": "archive_subject", "title": "Archive Subject into Zipped file", "topics": [ "archive_subject" ] }, { "page": "arrange_data_dir", "title": "Initialize data repository", "topics": [ "arrange_data_dir" ] }, { "page": "arrange_modules", "title": "Update (optional), and check validity of modules", "topics": [ "arrange_modules" ] }, { "page": "as_subject", "title": "Make new subject object from character", "topics": [ "as_subject" ] }, { "page": "attachDefaultDataRepository", "title": "Attach subject data", "topics": [ "attachDefaultDataRepository" ] }, { "page": "baseline", "title": "Baseline signals", "topics": [ "baseline" ] }, { "page": "cache_raw_voltage", "title": "Import Subject \"Matlab\" File and Create \"HDF5\" files", "topics": [ "cache_raw_voltage" ] }, { "page": "check_data_repo", "title": "Check if default data environment has object", "topics": [ "check_data_repo" ] }, { "page": "check_dependencies", "title": "Check and Install RAVE Dependencies", "topics": [ "check_dependencies" ] }, { "page": "check_epoch", "title": "Check if epoch file is valid", "topics": [ "check_epoch" ] }, { "page": "check_subject", "title": "Complete validity check a RAVE subject", "topics": [ "check_subject" ] }, { "page": "check_subjects_old", "title": "check subject validity tools (use check_subjects2)", "topics": [ "check_subjects_old" ] }, { "page": "check_subjects2", "title": "check subject validity tools", "topics": [ "check_subjects2" ] }, { "page": "create_local_cache", "title": "Create local cache to speed up loading speed", "topics": [ "create_local_cache" ] }, { "page": "customizedUI", "title": "Customized Shiny Elements", "topics": [ "customizedUI" ] }, { "page": "decimate_fir", "title": "Decimate or Down-sample a Signal using 'FIR' Filters", "topics": [ "decimate_fir" ] }, { "page": "define_initialization", "title": "Defines 'RAVE' Module Initialization Defines the global variables for the module. Called along with 'define_input' to define UI initialization actions once a subject is loaded.", "topics": [ "define_initialization", "define_initialization.default", "define_initialization.rave_module_debug", "define_initialization.rave_running", "define_initialization.rave_running_local" ] }, { "page": "define_input", "title": "Defines 'RAVE' Module Inputs", "topics": [ "define_input", "define_input.default", "define_input.rave_module_debug", "define_input.rave_running", "define_input.rave_running_local" ] }, { "page": "define_output", "title": "Define 'RAVE' Module Output", "topics": [ "define_output", "define_output.default" ] }, { "page": "detect_modules", "title": "Check all packages to for new RAVE module packages", "topics": [ "detect_modules" ] }, { "page": "diagnose_signal", "title": "Plot and Inspect Signals in Trace, Periodogram, and Histogram", "topics": [ "diagnose_signal" ] }, { "page": "download_sample_data", "title": "Function to download demo data to data repository", "topics": [ "download_sample_data" ] }, { "page": "download_subject_data", "title": "Function to download subjects from internet/local", "topics": [ "download_subject_data" ] }, { "page": "ECoGRepository", "title": "R6 class for 'iEEG/ECoG' data Repository", "topics": [ "ECoGRepository" ] }, { "page": "Electrode", "title": "R6 Class for Electrode", "topics": [ "Electrode" ] }, { "page": "electrode_localization", "title": "Electrode localization", "topics": [ "electrode_localization" ] }, { "page": "eval_when_ready", "title": "Add Function to run once Module is Ready", "topics": [ "eval_when_ready" ] }, { "page": "ExecEnvir", "title": "Session-based Module Runtime Environment Class", "topics": [ "ExecEnvir" ] }, { "page": "export_diagnose_voltage", "title": "Export voltage (analog trace) diagnostic plots for each electrode", "topics": [ "export_diagnose_voltage" ] }, { "page": "fake_session", "title": "Fake 'shiny' Session for Debug Purpose", "topics": [ "fake_session" ] }, { "page": "finalize_installation", "title": "Finalize installation", "topics": [ "finalize_installation" ] }, { "page": "get_content", "title": "Parse 'RAVE' Module Contents", "topics": [ "get_content" ] }, { "page": "get_dir", "title": "Get Directories in `RAVE`", "topics": [ "get_dir" ] }, { "page": "get_fake_updated_message", "title": "internally used for debugging functions", "topics": [ "get_fake_updated_message" ] }, { "page": "get_mem_usage", "title": "Get RAM usage", "topics": [ "get_mem_usage" ] }, { "page": "get_module", "title": "Function to find modules in packages", "topics": [ "get_module" ] }, { "page": "get_path", "title": "Safe Way to Access Module Package Files Using Relative Path", "topics": [ "get_path" ] }, { "page": "get_rave_theme", "title": "Get RAVE Theme from Package Settings", "topics": [ "get_rave_theme" ] }, { "page": "get_subjects", "title": "Get all subjects within project", "topics": [ "get_subjects" ] }, { "page": "get_val", "title": "Get Value or Default", "topics": [ "get_val" ] }, { "page": "getDefaultDataRepository", "title": "Get environment where subject data is loaded", "topics": [ "getDefaultDataRepository" ] }, { "page": "getExecEnvirFromContext", "title": "Get Module Runtime Environment from Current Context", "topics": [ "getExecEnvirFromContext" ] }, { "page": "getModuleEnvirFromContext", "title": "Get Module Instance from Current Context", "topics": [ "getModuleEnvirFromContext" ] }, { "page": "import_electrodes", "title": "Import '.csv' files that contain electrode information", "topics": [ "import_electrodes" ] }, { "page": "init_app", "title": "Initialize main application for debugging purpose", "topics": [ "init_app" ] }, { "page": "init_module", "title": "Initialize 'RAVE' module for debug purpose", "topics": [ "init_module" ] }, { "page": "lapply_async", "title": "'lapply' using future package in asynchronous way", "topics": [ "lapply_async", "lapply_async3" ] }, { "page": "load_local_cache", "title": "Load local cache for fast importing voltage, power, and phase", "topics": [ "load_local_cache" ] }, { "page": "load_meta", "title": "Load subject meta data", "topics": [ "load_meta" ] }, { "page": "load_modules", "title": "Load RAVE Modules", "topics": [ "load_modules" ] }, { "page": "load_rave_module_package", "title": "Function to load RAVE module package with UI tools", "topics": [ "load_rave_module_package" ] }, { "page": "load_scripts", "title": "Load scripts that cannot put into package R folder", "topics": [ "load_scripts" ] }, { "page": "module_analysis_names", "title": "Find module analysis names", "topics": [ "module_analysis_names" ] }, { "page": "ModuleEnvir", "title": "R6 'RAVE' Module Class", "topics": [ "ModuleEnvir" ] }, { "page": "mount_demo_subject", "title": "Load Demo Subject According to Package Configuration File", "topics": [ "mount_demo_subject", "mount_demo_subject.rave_module_debug", "mount_demo_subject.rave_running", "mount_demo_subject.rave_running_local" ] }, { "page": "notch_channel", "title": "Filter line noise out from ECoG channels", "topics": [ "notch_channel" ] }, { "page": "notch_filter", "title": "Apply Notch Filter to Analog Trace Data", "topics": [ "notch_filter" ] }, { "page": "plot_signals", "title": "Plot signals line by line", "topics": [ "plot_signals" ] }, { "page": "progress", "title": "A wrapper for shiny Progress object", "topics": [ "progress" ] }, { "page": "pwelch", "title": "Plot \"Welch\" Periodogram", "topics": [ "pwelch" ] }, { "page": "r_to_py.Subject", "title": "Convert subject to python object", "topics": [ "r_to_py.Subject" ] }, { "page": "rave_brain2", "title": "Tools to load and view brain in 3D viewer", "topics": [ "rave_brain2" ] }, { "page": "rave_checks", "title": "Check if data is loaded for current module", "topics": [ "rave_checks" ] }, { "page": "rave_context", "title": "'RAVE' Context: Read and Set Context of Environments", "topics": [ "rave_context" ] }, { "page": "rave_context_generics", "title": "Create S3 Generics that Respects 'RAVE' Context", "topics": [ "rave_context_generics" ] }, { "page": "rave_failure", "title": "RAVE Failure Message", "topics": [ "rave_failure" ] }, { "page": "rave_ignore", "title": "Functions for development use", "topics": [ "rave_ignore" ] }, { "page": "rave_import_rawdata", "title": "Import Raw Signal from Non-standard Formats", "topics": [ "rave_import_rawdata" ] }, { "page": "rave_module_tools", "title": "Tools for module writers", "topics": [ "rave_module_tools" ] }, { "page": "rave_options", "title": "Function to change rave-options", "topics": [ "rave_options" ] }, { "page": "rave_prepare", "title": "Load Subject and Create 'iEEG/ECoG' Data Environment", "topics": [ "rave_prepare" ] }, { "page": "rave_preprocess", "title": "RAVE Preprocess Function", "topics": [ "rave_preprocess" ] }, { "page": "rave_preprocess_tools", "title": "Function to create RAVE preprocess tools", "topics": [ "rave_preprocess_tools" ] }, { "page": "rave_version", "title": "Get RAVE version", "topics": [ "rave_version" ] }, { "page": "rave-cache", "title": "Cache R Objects with Different levels", "topics": [ "cache", "cache.default", "cache.rave_running", "cache.rave_running_local", "cache_input", "clear_cache", "rave-cache" ] }, { "page": "rave-tabs", "title": "Open/Close a tab in RAVE main application", "topics": [ "close_tab", "open_tab", "rave-tabs" ] }, { "page": "read_mgrid", "title": "Make 'iElvis' 'mgrid' file", "topics": [ "read_mgrid" ] }, { "page": "reload_module_package", "title": "Reload 'RAVE' module package without restarting 'RStudio'", "topics": [ "reload_module_package" ] }, { "page": "safe_write_csv", "title": "Save data to \"CSV\", if file exists, rename old file", "topics": [ "safe_write_csv" ] }, { "page": "save_meta", "title": "Function to save meta data to subject", "topics": [ "save_meta" ] }, { "page": "save_options", "title": "Function to locally save options (deprecated)", "topics": [ "save_options" ] }, { "page": "session-reactives", "title": "Get `shiny' \"input\" and \"output\" objects under current context", "topics": [ "getDefaultReactiveInput", "getDefaultReactiveInput.default", "getDefaultReactiveInput.rave_module_debug", "getDefaultReactiveInput.rave_running", "getDefaultReactiveInput.rave_running_local", "getDefaultReactiveOutput", "getDefaultReactiveOutput.default", "getDefaultReactiveOutput.rave_module_debug", "getDefaultReactiveOutput.rave_running", "getDefaultReactiveOutput.rave_running_local", "session-reactives" ] }, { "page": "set_rave_theme", "title": "Set and Return RAVE theme", "topics": [ "set_rave_theme" ] }, { "page": "shinirize", "title": "Convert module to objects used in shiny", "topics": [ "shinirize" ] }, { "page": "start_rave", "title": "Start RAVE main application", "topics": [ "launch_demo", "start_rave", "start_rave2", "start_rave_legacy" ] }, { "page": "start_yael", "title": "Start 'YAEL' electrode localization", "topics": [ "start_yael" ] }, { "page": "Subject", "title": "R6 Class for 'RAVE' Subject", "topics": [ "Subject" ] }, { "page": "subject_tmpfile", "title": "Create temp file in subject module folder", "topics": [ "subject_tmpfile" ] }, { "page": "suma_spec_parse", "title": "Parse 'SUMA' 'spec' file", "topics": [ "suma_spec_parse" ] }, { "page": "suma_surface_volume_parse", "title": "Parse 'AFNI' 'BRIK/HEAD' file", "topics": [ "suma_surface_volume_parse" ] }, { "page": "to_module", "title": "Parse 'RAVE' Module and Returns Parsed Content in Environments", "topics": [ "to_module" ] }, { "page": "view_layout", "title": "Debug-use only, reload package, mount demo subject, and launch shiny app", "topics": [ "view_layout" ] }, { "page": "wavelet", "title": "Wavelet Transformation With Phase", "topics": [ "wavelet" ] }, { "page": "wavelet_kernels", "title": "Returns wavelets to be used for wavelet function", "topics": [ "wavelet_kernels" ] } ], "_readme": "https://github.com/beauchamplab/rave/raw/HEAD/README.md", "_rundeps": [ "abind", 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