{ "_id": "6a106f0bacfb0bcc41cab53c", "Package": "bidsr", "Title": "A Brain Imaging Data Structure ('BIDS') Parser", "Version": "0.1.1", "URL": "https://dipterix.org/bidsr/, https://github.com/dipterix/bidsr/", "BugReports": "https://github.com/dipterix/bidsr/issues", "Authors@R": "c(\nperson(\"Zhengjia\", \"Wang\", email = \"dipterix.wang@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5629-1116\")),\nperson(\"Trustees of the University of Pennsylvania\", role = c(\"cph\"),\ncomment = \"All files in this package unless explicitly stated in the file or listed in the 'Copyright' section below.\")\n)", "Description": "Parse and read the files that comply with the brain\nimaging data structure, or 'BIDS' format, see the publication\nfrom Gorgolewski, K., Auer, T., Calhoun, V. et al. (2016)\n. Provides query functions to\nextract and check the 'BIDS' entity information (such as\nsubject, session, task, etc.) from the file paths and suffixes\naccording to the specification. The package is developed and\nused in the reproducible analysis and visualization of\nintracranial electroencephalography, or 'RAVE', see Magnotti,\nJ. F., Wang, Z., and Beauchamp, M. S. (2020)\n; see 'citation(\"bidsr\")'\nfor details and attributions.", "Copyright": "This software includes material (schema files from directory\n'inst/bids-schema') from the 'BIDS' specification, which is\nlicensed under a Creative Commons Attribution 4.0 International\nLicense; see a copy of the license under\n'inst/bids-schema/LICENSE.txt', and website\n for details.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Language": "en-US", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake make libuv1-dev", "Repository": "https://dipterix.r-universe.dev", "Date/Publication": "2025-07-22 17:37:14 UTC", "RemoteUrl": "https://github.com/dipterix/bidsr", "RemoteRef": "HEAD", "RemoteSha": "ef6099666aa7801158873e2fc50cba09bfe6b163", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-07 07:50:07 UTC", "User": "root" }, "Author": "Zhengjia Wang [aut, cre] (ORCID:\n),\nTrustees of the University of Pennsylvania [cph] (All files in this\npackage unless explicitly stated in the file or listed in the\n'Copyright' section below.)", "Maintainer": "Zhengjia Wang ", "MD5sum": "8b2104063944c73b3bb3ef2e08ed8606", "_user": "dipterix", "_type": "src", "_file": "bidsr_0.1.1.tar.gz", "_fileid": "c550d3236da09d7b26d5bb2aa36e4edec39d55eb56d9d13449456ef42fa1c2c1", "_filesize": 630995, "_sha256": "c550d3236da09d7b26d5bb2aa36e4edec39d55eb56d9d13449456ef42fa1c2c1", "_created": "2026-05-07T07:50:07.000Z", "_published": "2026-05-22T14:58:19.474Z", "_distro": "noble", "_jobs": [ { "job": 77405393931, "time": 135, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6849717425" }, { "job": 77405394016, "time": 132, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6849718437" }, { "job": 77405394002, "time": 91, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6849704475" }, { "job": 77405394104, "time": 112, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6849710923" }, { "job": 77405394037, "time": 217, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6849677258" }, { "job": 77405393360, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7163596888" }, { "job": 77405394011, "time": 87, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6849703793" }, { "job": 77405394386, "time": 84, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6849702709" }, { "job": 77405394210, "time": 144, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6849720203" } ], "_buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/dipterix/bidsr", "_commit": { "id": "ef6099666aa7801158873e2fc50cba09bfe6b163", "author": "dipterix ", "committer": "dipterix ", "message": "Ready for CRAN\n", "time": 1753205834 }, "_maintainer": { "name": "Zhengjia Wang", "email": "dipterix.wang@gmail.com", "login": "dipterix", "uuid": 8163576, "orcid": "0000-0001-5629-1116" }, "_registered": true, "_dependencies": [ { "package": "checkmate", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "fastmap", "role": "Imports" }, { "package": "fs", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "nanotime", "role": "Imports" }, { "package": "S7", "version": ">= 0.2.0", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "uuid", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "dipterix", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-30", "n": 3 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "dipterix", "count": 41, "uuid": 8163576 } ], "_userbio": { "uuid": 8163576, "type": "user", "name": "Dipterix Wang", "description": "Know the known to know the unknown" }, "_downloads": { "count": 256, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bidsr" }, "_devurl": "https://github.com/dipterix/bidsr", "_pkgdown": "https://dipterix.org/bidsr/", "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/bidsr.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/dipterix/bidsr", "_realowner": "dipterix", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2025-04-02" }, { "version": "0.1.1", "date": "2025-07-22" } ], "_exports": [ "as_bids_tabular", "bids_project", "bids_property", "bids_property_character", "bids_property_choice", "bids_property_collapsed_character", "bids_property_data_frame", "bids_property_deprecated", "bids_property_entity_list", "bids_property_integerish", "bids_property_list", "bids_property_named_list", "bids_property_numeric", "bids_property_optional", "bids_property_prohibited", "bids_property_recommended", "bids_property_required", "bids_property_tabular_column_descriptor_list", "bids_property_tabular_content", "bids_property_tabular_meta", "bids_property_unnamed_list", "bids_subject", "BIDSClassBase", "BIDSDatasetDescription", "BIDSDatasetGeneratedBy", "BIDSEntity_any_optional", "BIDSEntity_any_prohibited", "BIDSEntity_any_required", "BIDSEntity_index_optional", "BIDSEntity_index_prohibited", "BIDSEntity_index_required", "BIDSEntity_label_optional", "BIDSEntity_label_prohibited", "BIDSEntity_label_required", "BIDSMap", "BIDSProject", "BIDSSubject", "BIDSTabular", "BIDSTabularColumnDescriptor", "BIDSTabularMetaSidecar", "BIDSTabularParticipants", "BIDSTabularPhenotype", "BIDSTabularSamples", "BIDSTabularScans", "BIDSTabularSessions", "BIDSURI", "download_bids_examples", "get_bids_dataset_description", "get_bids_entity", "get_bids_entity_rules", "get_bids_participants", "get_bids_phenotype_data", "get_bids_samples", "new_bids_class", "new_bids_entity_file_class", "new_bids_tabular_class", "parse_path_bids_entity", "query_bids", "resolve_bids_path", "save_bids_tabular", "save_bids_tabular_default", "set_props", "valid_eventually" ], "_help": [ { "page": "BIDSTabular", "title": "Class definitions and utilities for 'BIDS' tabular", "topics": [ "as_bids_tabular", "BIDSTabular", "BIDSTabularColumnDescriptor", "BIDSTabularMetaSidecar", "new_bids_tabular_class", "save_bids_tabular", "save_bids_tabular_default" ] }, { "page": "bids_project", "title": "'BIDS' project class", "topics": [ "BIDSProject", "bids_project" ] }, { "page": "bids_property", "title": "''S7'' property for 'BIDS' classes", "topics": [ "bids_property", "bids_property_character", "bids_property_choice", "bids_property_collapsed_character", "bids_property_data_frame", "bids_property_deprecated", "bids_property_entity_list", "bids_property_integerish", "bids_property_list", "bids_property_named_list", "bids_property_numeric", "bids_property_optional", "bids_property_prohibited", "bids_property_recommended", "bids_property_required", "bids_property_tabular_column_descriptor_list", "bids_property_tabular_content", "bids_property_tabular_meta", "bids_property_unnamed_list" ] }, { "page": "bids_subject", "title": "'BIDS' subject class", "topics": [ "BIDSSubject", "bids_subject" ] }, { "page": "BIDSClassBase", "title": "Low-level abstract class for 'bidsr'", "topics": [ "BIDSClassBase" ] }, { "page": "BIDSDatasetGeneratedBy", "title": "Class definition for 'BIDS' meta-data ''GeneratedBy''", "topics": [ "BIDSDatasetGeneratedBy" ] }, { "page": "BIDSEntity", "title": "Class definitions of 'BIDS' entity", "topics": [ "BIDSEntity", "BIDSEntity_any_optional", "BIDSEntity_any_prohibited", "BIDSEntity_any_required", "BIDSEntity_index_optional", "BIDSEntity_index_prohibited", "BIDSEntity_index_required", "BIDSEntity_label_optional", "BIDSEntity_label_prohibited", "BIDSEntity_label_required" ] }, { "page": "BIDSMap", "title": "Low-level nested map to store key-value data with inherited structure", "topics": [ "BIDSMap" ] }, { "page": "BIDSTabularScans", "title": "'BIDS' scans table class", "topics": [ "BIDSTabularScans" ] }, { "page": "BIDSTabularSessions", "title": "'BIDS' sessions table class", "topics": [ "BIDSTabularSessions" ] }, { "page": "BIDSURI", "title": "'BIDS' uniform resource indicator ('URI') class definition", "topics": [ "BIDSURI" ] }, { "page": "download_bids_examples", "title": "Download 'BIDS' example data-sets", "topics": [ "download_bids_examples" ] }, { "page": "BIDSDatasetDescription", "title": "Class definition of 'BIDS' data-set description", "topics": [ "BIDSDatasetDescription", "get_bids_dataset_description" ] }, { "page": "get_bids_entity", "title": "Get 'BIDS' entity values from file", "topics": [ "get_bids_entity", "get_bids_entity_rules" ] }, { "page": "BIDSTabularParticipants", "title": "'BIDS' participant table class", "topics": [ "BIDSTabularParticipants", "get_bids_participants" ] }, { "page": "BIDSTabularPhenotype", "title": "'BIDS' phenotype and assessment table class", "topics": [ "BIDSTabularPhenotype", "get_bids_phenotype_data" ] }, { "page": "BIDSTabularSamples", "title": "'BIDS' samples table class", "topics": [ "BIDSTabularSamples", "get_bids_samples" ] }, { "page": "new_bids_class", "title": "Create new 'bidsr' class definition", "topics": [ "new_bids_class" ] }, { "page": "new_bids_entity_file_class", "title": "Class generator for 'BIDS' file class with entities", "topics": [ "new_bids_entity_file_class" ] }, { "page": "parse_path_bids_entity", "title": "Parse 'BIDS' entities from file path", "topics": [ "parse_path_bids_entity" ] }, { "page": "query_bids", "title": "Query 'BIDS'", "topics": [ "query_bids" ] }, { "page": "resolve_bids_path", "title": "Resolve path of a 'BIDS' object", "topics": [ "resolve_bids_path" ] } ], "_readme": "https://github.com/dipterix/bidsr/raw/HEAD/README.md", "_rundeps": [ "backports", "bit", "bit64", "checkmate", "data.table", "fastmap", "fs", "jsonlite", "lattice", "nanotime", "Rcpp", "RcppCCTZ", "RcppDate", "S7", "uuid", "zoo" ], "_vignettes": [ { "source": "aaa-get-started.Rmd", "filename": "aaa-get-started.html", "title": "Get Started", "engine": "knitr::rmarkdown", "headings": [ "Overview of a BIDS project", "File dataset_description.json", "File participants.tsv", "Instantiate a BIDS subject", "Raw, source, or derivative data", "Query subject files by types", "Filter & get BIDS entity" ], "created": "2025-03-26 02:00:28", "modified": "2025-07-22 17:14:13", "commits": 5 } ], "_score": 4.477121254719663, "_indexed": true, "_nocasepkg": "bidsr", "_universes": [ "dipterix" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-05-07T07:52:22.000Z", "distro": "noble", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "bf10145156f0f8454c8821f180d5d767a11401ad676398adc50ad020e7b0cba9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-05-07T07:52:28.000Z", "distro": "noble", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "0fd51fd0b8def624e1f38f5f4902bd0eb3b31e0fef5309ba8cbd177c43a82b7c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-05-07T07:51:44.000Z", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "700587ae6be22c2278b32f28f52d3761fd7e9bec5137888f34b023d7695cab0b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-05-07T07:52:03.000Z", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "afbff9c7b44df846eddb36c31b17b0cbf308271a23a247f81320619674eac70b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-05-07T07:51:23.000Z", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "b8345bf003d6ecc1e5bda73a40a2662d92fa25b4f31e2d6fa55631fa017c36a1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-05-07T07:51:26.000Z", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "e27d37292ec0554f79b45cd8eaf3bd2933a1f1cb3ca6866a77e09b8f36b0c39c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" }, { "r": "4.6.0", "os": "win", "version": "0.1.1", "date": "2026-05-07T07:52:27.000Z", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "29ba5370791aebbb0c659e139581d052940330bb1cd6facf9003f88daad213c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-05-22T14:57:59.000Z", "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163", "fileid": "62ad903d9d53eeef132aa564b004cbb8b1e9db4b08f7e176361e34e4047bc5b2", "status": "success", "buildurl": "https://github.com/r-universe/dipterix/actions/runs/25482976479" } ] }